Index

A

add_full_scale_drawing() (mri_distortion_toolkit.PhantomDesigner.PhantomSlice method)

B

bcolors (class in mri_distortion_toolkit.utilities)

build_dicom_affine() (in module mri_distortion_toolkit.utilities)

C

calculate_harmonics() (in module mri_distortion_toolkit.calculate_harmonics) combine_harmonics() (in module mri_distortion_toolkit.utilities) compare_recon_report_with_ground_truth_report() (in module mri_distortion_toolkit.utilities) convert_cartesian_to_spherical() (in module mri_distortion_toolkit.utilities)

convert_spherical_harmonics() (in module mri_distortion_toolkit.utilities) convert_spherical_to_cartesian() (in module mri_distortion_toolkit.utilities) ConvertMatchedMarkersToBz (class in mri_distortion_toolkit.FieldCalculation) correct_all_images() (mri_distortion_toolkit.DistortionCorrection.DistortionCorrectorBase method)

D

DefaultTestSuite (class in mri_distortion_toolkit.Reports) dicom_to_numpy() (in module mri_distortion_toolkit.utilities) DistortionCorrectorBase (class in mri_distortion_toolkit.DistortionCorrection)

draw_DSV() (mri_distortion_toolkit.PhantomDesigner.PhantomSlice method) draw_Load() (mri_distortion_toolkit.PhantomDesigner.PhantomSlice method) draw_slice() (mri_distortion_toolkit.PhantomDesigner.PhantomSlice method)

E

Elekta_Distortion_tests (class in mri_distortion_toolkit.Reports)

enumerate_subfolders() (in module mri_distortion_toolkit.utilities) export_to_slicer() (mri_distortion_toolkit.MarkerAnalysis.MarkerVolume method)

G

generate_harmonic_names() (in module mri_distortion_toolkit.utilities) generate_legendre_basis() (in module mri_distortion_toolkit.utilities)

get_dicom_data() (in module mri_distortion_toolkit.utilities) get_harmonics() (in module mri_distortion_toolkit.utilities)

I

ImageDomainDistortionCorrector (class in mri_distortion_toolkit.DistortionCorrection)

K

KspaceDistortionCorrector (class in mri_distortion_toolkit.DistortionCorrection)

M

MarkerVolume (class in mri_distortion_toolkit.MarkerAnalysis) MatchedMarkerVolumes (class in mri_distortion_toolkit.MarkerAnalysis) module mri_distortion_toolkit.calculate_harmonics mri_distortion_toolkit.DistortionCorrection mri_distortion_toolkit.FieldCalculation mri_distortion_toolkit.Harmonics mri_distortion_toolkit.MarkerAnalysis mri_distortion_toolkit.PhantomDesigner mri_distortion_toolkit.Reports mri_distortion_toolkit.utilities mri_distortion_toolkit.calculate_harmonics module mri_distortion_toolkit.DistortionCorrection module

mri_distortion_toolkit.FieldCalculation module mri_distortion_toolkit.Harmonics module mri_distortion_toolkit.MarkerAnalysis module mri_distortion_toolkit.PhantomDesigner module mri_distortion_toolkit.Reports module mri_distortion_toolkit.utilities module MRI_QA_Reporter (class in mri_distortion_toolkit.Reports)

P

perturb_marker_positions() (mri_distortion_toolkit.MarkerAnalysis.MarkerVolume method) PhantomSlice (class in mri_distortion_toolkit.PhantomDesigner) plot_3D_markers() (mri_distortion_toolkit.MarkerAnalysis.MarkerVolume method) (mri_distortion_toolkit.MarkerAnalysis.MatchedMarkerVolumes method) plot_compressed_markers() (mri_distortion_toolkit.MarkerAnalysis.MatchedMarkerVolumes method) plot_compressed_MarkerVolumes() (in module mri_distortion_toolkit.utilities) plot_cut_planes() (mri_distortion_toolkit.Harmonics.SphericalHarmonicFit method)

plot_distortion_xyz_hist() (in module mri_distortion_toolkit.utilities) plot_harmonics_over_sphere() (in module mri_distortion_toolkit.utilities) plot_harmonics_pk_pk() (mri_distortion_toolkit.Harmonics.SphericalHarmonicFit method) plot_MarkerVolume_overlay() (in module mri_distortion_toolkit.utilities) plot_matched_volume_hist() (in module mri_distortion_toolkit.utilities) print_dict() (in module mri_distortion_toolkit.utilities) print_key_harmonics() (mri_distortion_toolkit.Harmonics.SphericalHarmonicFit method) printProgressBar() (in module mri_distortion_toolkit.utilities)

R

read_opera_table_file() (in module mri_distortion_toolkit.utilities)

reconstruct_Bz() (in module mri_distortion_toolkit.utilities) rotate_markers() (mri_distortion_toolkit.MarkerAnalysis.MarkerVolume method)

S

save_all_images() (mri_distortion_toolkit.DistortionCorrection.DistortionCorrectorBase method) save_all_images_as_dicom() (mri_distortion_toolkit.DistortionCorrection.DistortionCorrectorBase method)

save_dicom_data() (mri_distortion_toolkit.MarkerAnalysis.MarkerVolume method) sort_dicom_slices() (in module mri_distortion_toolkit.utilities) SphericalHarmonicFit (class in mri_distortion_toolkit.Harmonics)

T

test_distortion_less_than_1_mm_within_r_100_mm() (mri_distortion_toolkit.Reports.Elekta_Distortion_tests method) test_distortion_less_than_1mm_within_r_100() (mri_distortion_toolkit.Reports.TG284_Tests method) test_distortion_less_than_2_mm_within_r_150_mm() (mri_distortion_toolkit.Reports.Elekta_Distortion_tests method) test_distortion_less_than_2mm_within_r_100() (mri_distortion_toolkit.Reports.DefaultTestSuite method)

test_distortion_less_than_2mm_within_r_200() (mri_distortion_toolkit.Reports.TG284_Tests method) test_distortion_less_than_4_mm_within_r_200_mm() (mri_distortion_toolkit.Reports.Elekta_Distortion_tests method) test_distortion_less_than_4mm_within_r_150() (mri_distortion_toolkit.Reports.DefaultTestSuite method) TG284_Tests (class in mri_distortion_toolkit.Reports) translate_markers() (mri_distortion_toolkit.MarkerAnalysis.MarkerVolume method)

W

write_html_report() (mri_distortion_toolkit.Reports.MRI_QA_Reporter method)