Index

A

AxisFontSize (TopasOpt.utilities.FigureSpecs attribute)

B

BayesianOptimiser (class in TopasOpt.Optimisers) bcolors (class in TopasOpt.utilities)

BlackBoxFunction() (TopasOpt.Optimisers.TopasOptBaseClass method) BOLD (TopasOpt.utilities.bcolors attribute)

C

compare_multiple_results() (in module TopasOpt.utilities)

E

ENDC (TopasOpt.utilities.bcolors attribute)

ExtractDataFromDoseCube() (TopasOpt.utilities.WaterTankData method)

F

FAIL (TopasOpt.utilities.bcolors attribute)

FigureSpecs (class in TopasOpt.utilities) Font (TopasOpt.utilities.FigureSpecs attribute)

G

generate_run_all_scripts_shell_script() (in module TopasOpt.utilities)

generate_topas_script_generator (class in TopasOpt.TopasScriptGenerator) get_all_files() (in module TopasOpt.utilities)

H

HEADER (TopasOpt.utilities.bcolors attribute)

L

LabelFontSize (TopasOpt.utilities.FigureSpecs attribute)

M

module TopasOpt.Optimisers TopasOpt.TopasScriptGenerator TopasOpt.utilities

N

NelderMeadOptimiser (class in TopasOpt.Optimisers)

newJSONLogger (class in TopasOpt.utilities)

O

OKBLUE (TopasOpt.utilities.bcolors attribute)

OKCYAN (TopasOpt.utilities.bcolors attribute) OKGREEN (TopasOpt.utilities.bcolors attribute)

P

Plot_DepthDose() (TopasOpt.utilities.WaterTankData method) Plot_DosePlanes() (TopasOpt.utilities.WaterTankData method)

Plot_Profiles() (TopasOpt.utilities.WaterTankData method) Plot_XYsurface() (TopasOpt.utilities.WaterTankData method) PlotLogFile() (in module TopasOpt.utilities)

R

ReadInLogFile() (in module TopasOpt.utilities) RestartOptimisation() (TopasOpt.Optimisers.BayesianOptimiser method)

RunOptimisation() (TopasOpt.Optimisers.BayesianOptimiser method) (TopasOpt.Optimisers.NelderMeadOptimiser method) (TopasOpt.Optimisers.TopasOptBaseClass method)

S

SetUpDirectoryStructure() (TopasOpt.Optimisers.TopasOptBaseClass method)

T

TitleFontSize (TopasOpt.utilities.FigureSpecs attribute) TopasOpt.Optimisers module TopasOpt.TopasScriptGenerator module

TopasOpt.utilities module TopasOptBaseClass (class in TopasOpt.Optimisers)

U

UNDERLINE (TopasOpt.utilities.bcolors attribute)

W

WARNING (TopasOpt.utilities.bcolors attribute)

WaterTankData (class in TopasOpt.utilities)